IRCICA - Bureau 132
Parc Scientifique de la Haute Borne
50, avenue Halley - BP 70478
59658 Villeneuve d'Ascq Cedex
FRANCE

Email: arnaud.fontaine_AT_inria.fr, arnaud.fontaine_AT_lifl.fr
Phone: +33 3 62 53 15 57 (IRCICA)

FRENCH ENGLISH

Research

I am a postdoc of POPS (LIFL/INRIA) in ANR SFINCS project.

Publications

International conferences

Computational identification of protein-coding sequences by comparative analysis
Arnaud FONTAINE and Hélène TOUZET
BIBM 2007, IEEE Computer Society (doi:10.1109/BIBM.2007.11)

International journals

Computational identification of protein-coding sequences by comparative analysis
Arnaud FONTAINE and Hélène TOUZET
International Journal of Data Mining and Bioinformatics 2009 - (doi:10.1504/IJDMB.2009.024849)

MAGNOLIA: multiple alignment of protein–coding and structural RNA sequences
Arnaud FONTAINE, Antoine de MONTE, Hélène TOUZET
Nucleic Acids Research - Web server issue 2008 (doi:10.1093/nar/gkn321)

NORINE: a database of nonribosomal peptides
Ségolène CABOCHE, Maude PUPIN, Valérie LECLERE, Arnaud FONTAINE, Philippe JACQUES, Grégory KUCHEROV
Nucleic Acids Research - Database issue 2008 (doi:10.1093/nar/gkm792)

Other

Prédiction de structure avec caRNAc, existant et développements en cours
Arnaud FONTAINE and Hélène TOUZET
AReNa workshop 2008

Identification of protein-coding genes and RNA genes by comparative analysis
Arnaud FONTAINE and Hélène TOUZET
Poster BBC 2007 (PDF)

Graines espacées et recherche d'ARN non-codants
Arnaud FONTAINE, Mathieu GIRAUD, Laurent NOE and Hélène TOUZET
Poster JOBIM 2007 (PDF)

Application bio-informatique: gènes à protéines et gènes à ARN
Arnaud FONTAINE and Hélène TOUZET
Journées Grid5000 à Lille 2006

RNA comparative analysis
Arnaud FONTAINE and Hélène TOUZET
Gent-Lille Workshop on Computational Biology 2006

Classification d'ARN: codant/non-codant
Arnaud FONTAINE and Hélène TOUZET
AReNa workshop 2005

How to detect non-coding RNAs ?
Arnaud FONTAINE and Hélène TOUZET
Poster JOBIM 2005 (PDF, supplementary material)

Teaching

  • 2005-2006
    • Algorithmic to first year's students
    • Data structures to first year's students
    • Computers architecture to first year's students
  • 2006-2007
    • Algorithmic to first year's students
    • Data structures to first year's students
    • Computer networks to first year's students
  • 2007-2008
    • Oriented Objects Programming to second year's students
    • Computers architecture to first year's students
  • 2008-2009
    • Operating systems to third year students

Links